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| CompressedSparseMatrix (Index_ nrow, Index_ ncol, ValueStorage_ values, IndexStorage_ indices, PointerStorage_ pointers, bool csr, const CompressedSparseMatrixOptions &options) |
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Index_ | nrow () const |
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Index_ | ncol () const |
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bool | is_sparse () const |
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double | is_sparse_proportion () const |
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bool | prefer_rows () const |
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double | prefer_rows_proportion () const |
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bool | uses_oracle (bool) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense (bool row, const Options &) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense (bool row, Index_ block_start, Index_ block_end, const Options &) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense (bool row, VectorPtr< Index_ > indices_ptr, const Options &) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse (bool row, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse (bool row, Index_ block_start, Index_ block_end, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse (bool row, VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_end, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > my_indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_end, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse (bool row, std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > my_indices_ptr, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row () const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (Index_ block_start, Index_ block_length) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_row (std::vector< Index_ > indices) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column () const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (Index_ block_start, Index_ block_length) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< MyopicDenseExtractor< Value_, Index_ > > | dense_column (std::vector< Index_ > indices) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row () const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (Index_ block_start, Index_ block_length) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_row (std::vector< Index_ > indices) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column () const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (Index_ block_start, Index_ block_length) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< MyopicSparseExtractor< Value_, Index_ > > | sparse_column (std::vector< Index_ > indices) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_row (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< OracularDenseExtractor< Value_, Index_ > > | dense_column (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_row (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const |
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std::unique_ptr< OracularSparseExtractor< Value_, Index_ > > | sparse_column (std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const |
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template<typename Value_, typename Index_, class ValueStorage_, class IndexStorage_, class PointerStorage_>
class tatami::CompressedSparseMatrix< Value_, Index_, ValueStorage_, IndexStorage_, PointerStorage_ >
Compressed sparse matrix representation.
- Template Parameters
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Value_ | Type of the matrix values. |
Index_ | Type of the row/column indices. |
ValueStorage_ | Vector class used to store the matrix values internally. This does not necessarily have to contain Value_ , as long as the type is convertible to Value_ . Methods should be available for size() , begin() , end() and [] . If a method is available for data() that returns a const Value_* , it will also be used. |
IndexStorage_ | Vector class used to store the row/column indices internally. This does not necessarily have to contain Index_ , as long as the type is convertible to Index_ . Methods should be available for size() , begin() , end() and [] . If a method is available for data() that returns a const Index_* , it will also be used. |
PointerStorage_ | Vector class used to store the column/row index pointers. Methods should be available for size() , begin() , end() and [] . |