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tatami_hdf5
tatami bindings for HDF5-backed matrices
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This is the complete list of members for tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >, including all inherited members.
| CompressedSparseMatrix(Index_ nrow, Index_ ncol, std::string file_name, std::string value_name, std::string index_name, std::string pointer_name, bool csr, const CompressedSparseMatrixOptions &options) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inline |
| CompressedSparseMatrix(Index_ ncsr, Index_ ncol, std::string file_name, std::string value_name, std::string index_name, std::string pointer_name, bool csr) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inline |
| dense(bool row, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense(bool row, Index_ block_start, Index_ block_length, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense(bool row, tatami::VectorPtr< Index_ > indices_ptr, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, tatami::VectorPtr< Index_ > indices_ptr, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| dense_column(const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column() const | tatami::Matrix< Value_, Index_ > | |
| dense_column(Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| dense_column(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row() const | tatami::Matrix< Value_, Index_ > | |
| dense_row(Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| dense_row(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| index_type typedef | tatami::Matrix< Value_, Index_ > | |
| is_sparse() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| is_sparse_proportion() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| ncol() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| nrow() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| prefer_rows() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| prefer_rows_proportion() const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, Index_ block_start, Index_ block_length, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, tatami::VectorPtr< Index_ > indices_ptr, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse(bool row, std::shared_ptr< const tatami::Oracle< Index_ > > oracle, tatami::VectorPtr< Index_ > indices_ptr, const tatami::Options &opt) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| sparse_column(const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column() const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| sparse_column(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row() const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices, const Options &opt) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, Index_ block_start, Index_ block_length) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, VectorPtr< Index_ > indices_ptr) const | tatami::Matrix< Value_, Index_ > | |
| sparse_row(std::shared_ptr< const Oracle< Index_ > > oracle, std::vector< Index_ > indices) const | tatami::Matrix< Value_, Index_ > | |
| uses_oracle(bool) const (defined in tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ >) | tatami_hdf5::CompressedSparseMatrix< Value_, Index_, CachedValue_, CachedIndex_ > | inlinevirtual |
| value_type typedef | tatami::Matrix< Value_, Index_ > |
1.9.8